The Azores archipelago (Portugal) is located on an oceanic plateau, in a geodynamic environment prone to intense seismic and volcanic activity. In order to investigate the crustal structure in this region, we have conducted a local earthquake tomography study in the area of the islands of Faial, Pico and S. Jorge using data recorded in July 1998. The July 9th 1998 earthquake, near Faial Island, triggered an aftershock sequence of thousands of events that lasted for several months and were recorded by a total of 14 stations located on the three islands surrounding the epicentral area. In the upper crustal layers, consistency is seen between the tomographic results and the islands' surface volcanic units. Beneath the Faial central volcano a low Vp (<6.0 km/s) anomaly roughly located at 3–7 km depth, suggests a connection to the plumbing system, possibly the presence of a magma chamber. In NE Faial, a high Vp (>6.3 km/s) body was found located at mid-lower crust, most likely an intrusion of gabbroic composition, that is bordered by the registered seismic activity; its shape suggesting a tectonic controlled mechanism. The relocated hypocenters, together with the overall analysis of the Tomographic model, suggest a tectonic segmentation of Faial Island. The crustal thickness under the islands volcanic buildings of the Faial–Pico area was estimated at around 14 km.